by veggen on Mon Apr 30, 2012 5:44 am
I've seen this problem many times in recent history. It was caused by Linux version of Flash plugin itself. Starting with some specific version number, and only when hardware acceleration is enabled, the flash window would "shine through" everything. The temporary workaround is to disable hardware acceleration (right-click on a flash window, select settings, not global, and you should have an option there). But the thing is, this problem was fixed in recent Flash versions I think... or at least I stopped seeing it. Are you sure you have the latest flash and maybe even latest Firefox?