1) To be set up for this, you need a seperate /home partition. If you don't have this you're out of luck. If you do, keep going---
2) Open Synaptic. Go to File>Save Markings As
When the pop up for saving comes up, make sure you check off the "Save full state, not only changes". Now save it in your home directory.
3) If you've done changes to your sources.list, make sure to copy it
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sudo cp /etc/apt/sources.list ~/sources.list
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sudo mv ~/sources.list /etc/apt/sources.list
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sudo apt-get update
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sudo apt-get dist-upgrade
Edit by Husse: Never ever do that with any other repositories than those belonging to the installed version - never ever!
And as far as I can see this is what happens here - don't do this
Edit by Acid_1: I forgot--when you copy your apt sources, make sure you change the repos. So if you went from Gloria, make sure you change it to helena wherever it says gloria in the sources.list. Same with the Ubuntu repositories, if you go to helena, change it to the koala repos. This will keep you from borking your system. Thanks for clarifying Husse.
Hope this is useful to someone.