Questions about Grub, UEFI,the liveCD and the installer
If it drops you into a CLI login, than run it as it says. If it doesn't, you're okay.
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It is just a routine maintainance. It does this so you don't have to run fsck (unless it tells you to) (this answers question 1)
You should let this happen, otherwise the drives won't be checked and you might miss some big error that causes you to lose your data.
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