Boo: The same thing can be done without APTonCD. I never liked APTonCD. It's for cd's.

I don't have a cd-rom on my laptop. Anyway this method does exactly the same, just without a fancy gui.
Yes, everything you download with apt-get and updates is stored in /var/cache/apt/archives. Actually, I made a backup-script for that the other day.
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#!/bin/bash
clear
cd /var/cache/apt/archives/
tar -cvf ~/Debian_debs_backup.tar *.deb
Paste that into a new file and execute it. It will store every .deb in that cache-folder into a tar-file. When you later want to install everything from it again, simply unpack the tar into a folder, navigate into that folder and run this command from terminal;
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sudo dpkg -i *.deb
It's dirty, but it should work. :3