I figured it out! Its not perfect, as it requires you use a specific Chrome plugin and that you use Transmission as your BitTorrent client, but that aside it works very well.
Here is what to do:
1. Install ".torrent to Transmission" plugin for Chrome Here: https://chrome.google.com/webstore/deta ... jjiclnoekb
2. Go into Transmission's preferences and click on the web tab. Select "Enable Web Client" and create a username and password if you want. (If you make the username & password, you will need to input those into the plugin inside chrome)
Done! Now all you have to do to add magnet links to Transmission is right click and select ".torrent to Transmission"