BTW I've installed MATE using
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sudo apt-get install mint-meta-mate
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sudo apt-get install mint-meta-mate
http://forums.linuxmint.com/viewtopic.php?f=42&t=868131h. Icons duplicated?
I had this happening after logging into MATE and back into Gnome Shell, most application icons had both their Mint-X theme icons and their inherited Gnome icons visible. To undo this, install the for some reason no longer included by default program "Main Menu" (aka alacarte):
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sudo apt-get install alacarte
And untick away. In my case deleting all "Debian" subfolders did the trick. You must uncheck from the lowest level up, so expand all folders and uncheck upwards.