I'm not too sure about the customizing of Mint menu (I personally use the standard Gnome menu as I prefer it) but there is a new version of Mint menu in the Romeo repos, it may fix the issue with compiz. To get it, first you need to enable the Romo repos by opening a terminal and entering
and uncomment (remove the # from in front of the lines, but
only the ones that begin with "deb, and src-deb") under the Romeo ropos line, save the files and exit. Remove the Mintmenu from your panel. Then, again in the terminal do the
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sudo apt-get remove --purge mintmenu
and then once again in the terminal, enter
That will get you the newest Mintmenu.