This is more of a broad question, as it's part of the builds and the apt system on most Ubuntu-based systems I've seen.
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W: https://downloads.plex.tv/repo/deb/dists/public/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
I've seen workarounds, and many suggestions that just simply don't work.
(moving the legacy keyring from /etc/apt/trusted.gpg into /etc/apt/trusted.gpg.d)
The system then doesn't see the keyring anymore, and it will not even download the updates to begin with for those files.
This is kind of important, as mesarc, from it's PPA is still using the apt-key-add function when it adds the PPA into the system.
For me, mesarc, Plex and Yandex.disk are the only ones that aren't storing in /et/apt/trusted.gpg.d.
Even when I import the key through either software sources, or manually on the prompt, is still sends it to /etc/apt/trusted.gpg!
Help!