What I did was install the proprietary Nvida driver via Driver Manager. This is a must, as FAH will not work with Nouveau drivers. Also versions 375 and 378 did not work correctly for me, I've tried 381 and it seems OK but my go to driver version is nvidia-370.28. You may want a newer kernel than the 4.4 but it might depend on what else your doing, I'm not sure on that one.
FAHControl has to be setup to use the GPU by adding a GPU Slot in the Configuration, defaults for the new slot are good. Once the GPU slot is added, you will have to
sudo service FAHClient restart
once or twice or until the card is recognized. (in the system info tab of FAHControl)It takes one core to manage the GPU on GPU only WU's, but if desired CPU WU's can still be done as before, or just delete the CPU slot if your GPUing only.
Don't forget to wave as you go flying bye!